PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g00490.1
Common NameLR48_Vigan03g020800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 361aa    MW: 40337.3 Da    PI: 4.0943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g00490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-192271255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Vang04g00490.1 22 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACVLRG 71
                    789******.7*********33....35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.37E-322178No hitNo description
SuperFamilySSF541711.37E-192281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-272279IPR001471AP2/ERF domain
PfamPF008475.9E-142271IPR001471AP2/ERF domain
PROSITE profilePS5103219.5992279IPR001471AP2/ERF domain
SMARTSM003801.5E-342285IPR001471AP2/ERF domain
PRINTSPR003674.8E-82334IPR001471AP2/ERF domain
PRINTSPR003674.8E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAWDEVMKEA AALGSGRKLR KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR  60
AYDEAACVLR GANTRTNFWL SYQSSSTPAL PSKITNLLLQ RLKARNDTST KPCTVSSSSS  120
STSLLINQQQ SQQEDVRGTE STYFTLDQFS DFLNDPEDYS TNNNEFSNDS AQTDCITNSL  180
ESCLNENDDC REIEKEMVME FDFNSVTQTS SADVNSGGER EEDSEEGTDL SAQDFQFLDN  240
VVPSSYHYSL FEITEEIEEQ LEAENCGDEP SMFRELKVEP VNKNRSGVCI SNELTNLKMA  300
CSKNKIEAIE KNEEHIEAMD GKEPQTSVGM DCSSPSFSSS IDDELLLWNS LDLPTVCCVN  360
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496870.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0L9U2B60.0A0A0L9U2B6_PHAAN; Uncharacterized protein
STRINGGLYMA18G49761.11e-168(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-23related to AP2 11
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]